I think this article is almost spot on. Almost. However, when it comes to why or how an alien species would become hostile I think something quite important has been overlooked. The only thing they may want from us is our planet itself. Not the water, or minerals for the reasons stated, they are all abundant in the galaxy and are bound to be a lot closer to them than we are.
Habitable planets with liquid water, a protective magnetic field, a nice breathable atmosphere (yes, I know they might not breathe air as we do, but they probably would if they were interested in our planet) are the right distance from the star and have a usable temperature range, and that rotate, are probably not common at all. Look at all of the exoplanets we have discovered so far, hundreds of them apparently. How many are like the Earth in that they have all of the attributes that make them habitable, none.
Most of them are too close to, or too far from their star, or they don't rotate, or they don't have protective magnetic fields. I suspect our planet is very valuable indeed. A technologically advanced alien species may not be war like at all, yet be put into a position where they have to take our planet just to ensure the survival of their own species. They may feel terrible about having to annihilate the human race but have absolutely no choice. Then we would be screwed, there would be nothing we could do about it. We could be on a list of planets that due to the present level of technology of the resident species, meaning planet bound, would be easy pickings.
If, heaven forbid this did happen, I think they would do it biologically, so there would be no physical damage to buildings or other infrastructure for them to clear up. They would just spray a bio-weapon into the atmosphere, so there would be no rag-tag band of gutsy individuals who could work out a way of thwarting their plans, we wouldn't even know it was happening. Our structures etc may be of use to them. If they left it for 2 or 3 years they wouldn't even have any nasty smells to deal with, they would just sweep up all the bones and move in. This may account for some of the alien abduction stories, they would need to take some DNA samples from a wide variety of races to ensure complete eradication.
With regard SETI. As we know radio signals can travel across the galaxy it's well worth listening, you never know your luck. Of course radio may be very 'old hat' to a species that can travel around the galaxy on a 'willy nilly' basis. They would have to come up with something considerably faster than radio waves to communicate with their star fleet. So they may have discarded radio communications a very long time ago, that's why I suspect SETI haven't had much luck.
Edited by Occams Razor, 15 September 2012 - 12:26 PM.