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The answer is: Tough! God is unjust, simply because it can be! There is no justification, God makes some people "for noble use", chosen and predestined to do good works 'which God prepared in advance' 'according to his purpose'.
Calvinist make the same argument for their doctrine of predestination. But it is easy to take a small selection and not truly take in all that is being said.
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Romans 16:10 And not only so, but also when Rebekah had conceived children by one man, our forefather Isaac, 11 though they were not yet born and had done nothing either good or bad—in order that God’s purpose of election might continue, not because of works but because of him who calls—
Issac prayed for Rebekah to have children for she was barren. The Lord provided a miracle not because 'of works' that is to say because Issac was good or just because he wanted it but because through Rebekah God's plan would continue. The part of the plan was that Rebekah is one of the four matriarchs of the Jewish people. Without her many would not have been born that needed to be born for His plan of creating a nation to know Him as a vessel until the time was right for all the world to know Him.
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Romans 16:14 What shall we say then? Is there injustice on God’s part? By no means! 15 For he says to Moses, "I will have mercy on whom I have mercy, and I will have compassion on whom I have compassion." 16 So then it depends not on human will or exertion, but on God, who has mercy.
Now this verse comes into context. It is not saying we do not have free will. It is saying that God will have mercy and compassion on us because of God's mercy. This ties in to the whole we are saved because of faith and not works. Even so if one digs deeper faith will bring about works. But works alone without faith is just going through the motions.
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Romans 16:17 For the Scripture says to Pharaoh, "For this very purpose I have raised you up, that I might show my power in you, and that my name might be proclaimed in all the earth." 18 So then he has mercy on whomever he wills, and he hardens whomever he wills.
This has nothing to do with free will either. This must be taken into context with Exodus 9. This is about God's national strategy throughout the ages. Just as He allowed Rome to conquer as they did and build the first extensive road system so later not only would the early Christians use the same roads to spread the word, which would have been impossible before, but also since Rome conquered so many peoples that many of them lost their faith in their pagan deities who did not protect them from Rome and were more open to accepting Christ.
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Exodus 9:15 For by now I could have put out my hand and struck you and your people with pestilence, and you would have been cut off from the earth. 16 But for this purpose I have raised you up, to show you my power, so that my name may be proclaimed in all the earth. 17 You are still exalting yourself against my people and will not let them go
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As we an see in Exodus when God was telling Pharaoh that the purpose of raising him up was part of His plan to have His name proclaimed in all the earth. Letting the Israelites go was a major event during that era to let others know the God of the Israelites was not a parlor magician that simply turned staffs into snakes.
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Romans 9:19 You will say to me then, "Why does he still find fault? For who can resist his will?"
Again nothing to do with us not having a lack of free will. Compare 'for who can resist his will' to these two other scriptures and we can see it is about God's sovereign choice aka His national strategy.
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2 Chronicles 20:6 and said, "O LORD, God of our fathers, are you not God in heaven? You rule over all the kingdoms of the nations. In your hand are power and might, so that none is able to withstand you.
Daniel 4:34 At the end of the days I, Nebuchadnezzar, lifted my eyes to heaven, and my reason returned to me, and I blessed the Most High, and praised and honored him who lives forever, for his dominion is an everlasting dominion, and his kingdom endures from generation to generation; 35 all the inhabitants of the earth are accounted as nothing, and he does according to his will among the host of heaven and among the inhabitants of the earth; and none can stay his hand or say to him, "What have you done?"
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Romans 9:20 But who are you, O man, to answer back to God? Will what is molded say to its molder, "Why have you made me like this?"
Again nothing about personal free will not existing here either. 'Why have you made me like this?' is not a valid question to ask according to this scripture. This has nothing to do about if we make our own choices or not. Instead it is about us claiming that God did not make us and claiming He has no understanding but that we have more than Him. 'Why have you made me like this?' is not to be taken as 'Oh God made me a sinner so I will keep on sinning' instead it is about striving with God and having contention against Him.
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Isaiah 29:16 You turn things upside down! Shall the potter be regarded as the clay,that the thing made should say of its maker, "He did not make me"; or the thing formed say of him who formed it, "He has no understanding"?
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Isiah 45:9 "Woe to him who strives with him who formed him, a pot among earthen pots! Does the clay say to him who forms it, 'What are you making?' or 'Your work has no handles'? 10Woe to him who says to a father, 'What are you begetting?' or to a woman, 'With what are you in labor?'"
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Romans 9:21 Has the potter no right over the clay, to make out of the same lump one vessel for honorable use and another for dishonorable use?
The choice to be an honorable vessel is up to us ultimately. Sure God can intervene with free will now and then as He did with Jonah. As He did by hardening Pharaoh's heart. This does not take away our free will overall not in the least.
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2 Timothy 2:20 Now in a great house there are not only vessels of gold and silver but also of wood and clay, some for honorable use, some for dishonorable. 21 Therefore, if anyone cleanses himself from what is dishonorable, he will be a vessel for honorable use, set apart as holy, useful to the master of the house, ready for every good work